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Family GP001432


Family ID GP001432  add to my list RDF
Family name Phytoene synthase family   suggest a name
Synonym(s) Squalene synthase
Cross-reference(s) PMID:
White mutants of Chlamydomonas reinhardtii are defective in phytoene synthase.
15579683
Family Ontology
Close Hide
N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Phytoene synthase family
GP001432 (201)
2 GP016561 (198) ,
(plant-specificity: 100%)
GP112664 (6)
3 GP041180 (198) ,
(plant-specificity: 100%)
GP123753 (6)
4 GP070676 (198) ,
(plant-specificity: 100%)
GP090490 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 201
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
17 17
3 5
1 1
5 5
4 4
4 4
4 4
7 7
3 3
3 6
3 3
3 3
3 3
3 9
3 4
3 3
5 5
3 3
3 3
1 3
3 3
4 4
4 14
3 3
7 17
3 3
3 3
3 6
12 12
4 4
9 10
4 4
4 5
10 12
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Squalene/phytoene synthase
IPR002060
Squalene/phytoene synthase Family 86 (172) No
Squalene/phytoene synthase HpnD
IPR017828
Squalene/phytoene synthase HpnD Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Terpenoid synthase
IPR008949
Terpenoid synthase Domain 90 (180) No
Squalene/phytoene synthase, conserved site
IPR019845
Squalene/phytoene synthase, conserved site Conserved_site 73 (147) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR008949 IPR019845 IPR002060


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
201 160 (80%) 135 (67%) [62; 388; 599] ~348 1731 304