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Family GP001833


Family ID GP001833  add to my list RDF
Family name Haloacid dehalogenase hydrolase family   suggest a name
Synonym(s) Had hydrolase
Cross-reference(s) PMID:
Genetics and biochemistry of dehalogenating enzymes.
7826004
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Haloacid dehalogenase hydrolase family
GP001833 (204)
2 GP017202 (137) ,
(plant-specificity: 25%)
GP020294 (67)
3 GP041858 (119) ,
(plant-specificity: 25%)
GP045273 (67) , GP065962 (11) , GP060855 (6)
4 GP069308 (4724) , GP071270 (119) , GP074892 (67) , GP100382 (11) , GP094185 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 204
Species Count (w/o splice) Count (w/ splice)
1 1
11 11
5 14
4 4
6 6
4 4
4 4
4 4
7 7
4 4
5 7
5 5
3 3
5 5
6 13
5 6
3 3
3 3
4 4
3 3
3 4
3 3
5 5
3 10
4 4
5 10
4 4
4 4
5 7
10 10
4 4
4 5
4 4
4 6
5 10
3 3


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
HAD hydrolase, subfamily IA
IPR006439
HAD hydrolase, subfamily IA Family 80 (164) No
HAD-superfamily hydrolase, subfamily IA, REG-2-like
IPR011949
HAD-superfamily hydrolase, subfamily IA, REG-2-like Family 68 (138) Yes
HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB
IPR011951
HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
HAD-like domain
IPR023214
HAD-like domain Domain 89 (181) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR023214 IPR011949 IPR006439


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
204 162 (79%) 147 (72%) [32; 259; 1029] ~256 1442 149


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
204 147 (72%) 3.09669 2.62041 1.10473



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