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Family GP001267


Family ID GP001267  add to my list RDF
Family name FeS cluster insertion family   suggest a name
Cross-reference(s) PMID:
The Rhizobium etli gene iscN is highly expressed in bacteroids and required for nitrogen fixation.
12207230 PMID:
SufS is a NifS-like protein, and SufD is necessary for stability of the [2Fe-2S] FhuF protein in Escherichia coli.
10322040 PMID:
Assembly of iron-sulfur clusters. Identification of an iscSUA-hscBA-fdx gene cluster from Azotobacter vinelandii.
9582371
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
FeS cluster insertion family
GP001267 (197)
2 GP017064 (195)
3 GP043643 (86) , GP044723 (58) , GP045131 (51)
4 GP073151 (86) , GP074314 (58) , GP074762 (51)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 197
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
11 11
6 8
4 4
9 9
4 4
6 6
5 5
2 2
2 2
4 5
5 8
4 4
4 4
8 12
3 3
6 6
6 6
5 5
3 3
4 6
4 4
6 6
6 7
4 4
5 11
5 5
4 4
4 6
6 6
4 4
3 3
3 3
3 4
6 8
5 5


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
ISC system FeS cluster assembly, IscA scaffold
IPR011302
ISC system FeS cluster assembly, IscA scaffold Family 1 (1) Yes
FeS cluster insertion protein
IPR016092
FeS cluster insertion protein Family 83 (164) No
FeS cluster insertion ErpA
IPR023063
FeS cluster insertion ErpA Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
FeS cluster biogenesis
IPR000361
FeS cluster biogenesis Domain 94 (185) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000361 IPR016092
FeS cluster insertion, C-terminal, conserved site
IPR017870



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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
197 173 (88%) 168 (85%) [52; 147; 282] ~146 608 88


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
197 168 (85%) 1.32753 1.38129 0.242973



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Species



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