Family GP000116


Family ID GP000116  add to my list RDF
Family name Unannotated cluster   suggest a name
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in Viridiplantae plant-specific
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
(plant-specificity: 100%)
GP000116 (1347)
2
AUX/IAA transcription factor family
GP015122 (1299) ,
(plant-specificity: 100%)
GP022609 (43) ,
(plant-specificity: 100%)
GP026104 (7)
3 GP039861 (1287) ,
(plant-specificity: 100%)
GP047860 (41) ,
(plant-specificity: 100%)
GP051219 (7) ,
(plant-specificity: 100%)
GP123595 (7) , GP060912 (2) , GP054800 (3)
4 GP069392 (1273) ,
(plant-specificity: 100%)
GP077763 (38) ,
(plant-specificity: 100%)
GP083189 (7) ,
(plant-specificity: 100%)
GP081930 (6) , GP141680 (4) , GP144064 (3) , GP144170 (3) , GP144861 (3) , GP145050 (3) , GP080700 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1347
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
6 6
27 27
16 16
50 50
45 45
26 26
22 22
32 61
27 41
26 26
29 29
40 85
28 32
17 17
25 25
25 25
25 25
29 40
22 22
48 48
44 143
22 22
35 87
20 20
48 48
29 62
51 51
26 26
30 32
23 23
29 33
63 99
30 30


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
AUX/IAA protein
IPR003311
AUX/IAA protein Family 93 (1255) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Aux/IAA-ARF-dimerisation
IPR011525
Aux/IAA-ARF-dimerisation Domain 92 (1242) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011525 IPR003311


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Species
Information to display
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(click on the button above to get your protein list)