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Family GP002303


Family ID GP002303  add to my list RDF
Family name Phospholipase-like family   suggest a name
Comment
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Phospholipase-like family (plant-specificity: 91%)
GP002303 (194)
2
(plant-specificity: 98%)
GP020186 (93) ,
(plant-specificity: 9%)
GP020564 (65) ,
(plant-specificity: 94%)
GP024507 (22) ,
(plant-specificity: 100%)
GP023803 (14)
3
(plant-specificity: 98%)
GP045142 (93) ,
(plant-specificity: 9%)
GP045570 (65) ,
(plant-specificity: 94%)
GP050242 (22) ,
(plant-specificity: 100%)
GP049336 (14)
4 GP075211 (65) , GP074772 (53) ,
(plant-specificity: 100%)
GP132832 (28) ,
(plant-specificity: 94%)
GP080695 (20) ,
(plant-specificity: 100%)
GP079600 (14) , GP139428 (5) , GP141954 (4) , GP145830 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 194
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
1 1
1 1
1 1
4 4
3 3
1 1
2 2
3 5
3 5
2 2
2 2
4 7
2 2
2 2
9 9
7 7
2 2
8 17
3 3
10 10
4 16
2 2
4 16
4 4
9 9
3 5
4 4
6 6
13 13
6 6
3 4
9 16
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Phospholipase-like
IPR007942
Phospholipase-like Family 53 (102) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR007942


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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
194 144 (74%) 125 (64%) [57; 364; 884] ~360 2444 124




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Species



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