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Family GP001696


Family ID GP001696  add to my list RDF
Family name Magnesium chelatase family   suggest a name
Cross-reference(s) PMID:
Cloning, subcellular localization and expression of CHL1, a subunit of magnesium-chelatase in soybean.
7575622
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Magnesium chelatase family (plant-specificity: 9%)
GP001696 (193)
2
Magnesium chelatase, ATPase subunit I family (plant-specificity: 9%)
GP019021 (191)
3 GP043818 (100) , GP044268 (91)
4 GP073330 (100) , GP073820 (91)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 193
Species Count (w/o splice) Count (w/ splice)
2 2
5 5
57 57
5 5
2 2
5 5
3 3
4 4
4 4
5 5
3 3
2 3
2 3
2 2
2 2
2 5
2 2
2 2
1 1
2 2
3 3
3 3
3 3
6 6
3 7
2 2
4 9
2 2
3 3
2 5
9 9
2 2
4 4
5 5
3 3
6 7
3 3


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Magnesium chelatase, ATPase subunit I
IPR011775
Magnesium chelatase, ATPase subunit I Family 35 (68) Yes
Magnesium chelatase, ATPase subunit D
IPR011776
Magnesium chelatase, ATPase subunit D Family 30 (57) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Magnesium chelatase, ChlI subunit
IPR000523
Magnesium chelatase, ChlI subunit Domain 67 (130) No
AAA+ ATPase domain
IPR003593
AAA+ ATPase domain Domain 61 (117) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR003593 IPR011775 IPR000523


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
193 174 (90%) 153 (79%) [53; 422; 792] ~479 1788 280




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