Family GP000160


Family ID GP000160  add to my list RDF
Family name Exostosin family   suggest a name
Cross-reference(s) PMID:
Structure, chromosomal location, and expression profile of EXTR1 and EXTR2, new members of the multiple exostoses gene family.
9473480
Family Ontology
Close Hide
N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Exostosin family
GP000160 (1354)
2 GP015272 (649) , GP015718 (334) ,
Pectin-glucuronyltransferase subfamily
GP016221 (212) , GP018763 (84) , GP022045 (53) , GP024381 (11) , GP114326 (4) , GP116365 (3)
3 GP039953 (649) , GP040378 (334) , GP040854 (202) , GP043644 (84) , GP047203 (53) , GP050069 (11) , GP123405 (10) , GP126150 (4) , GP129159 (3)
4 GP069464 (649) , GP069960 (334) , GP070262 (202) , GP073152 (77) , GP077036 (52) , GP080459 (11) , GP134981 (10) , GP136747 (7) , GP141599 (4) , GP145847 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1354
Species Count (w/o splice) Count (w/ splice)
44 44
3 3
41 46
19 19
38 38
26 26
32 32
30 30
48 48
23 23
31 38
23 23
22 22
25 25
31 44
26 28
34 34
33 33
43 43
32 32
28 34
26 26
35 35
40 68
40 40
58 83
29 29
37 37
23 25
60 60
44 44
47 48
32 32
32 33
71 95
34 34


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Exostosin-like
IPR004263
Exostosin-like Family 91 (1233) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004263


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Species
Information to display
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(click on the button above to get your protein list)