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Family GP003418


Family ID GP003418  add to my list RDF
Family name Cytoskeleton-associated protein, CAP-Gly family   suggest a name
Synonym(s) Tubulin folding cofactor E / Pfifferling family (PFI)
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Cytoskeleton-associated protein, CAP-Gly family
GP003418 (136)
2
(plant-specificity: 9%)
GP019928 (69) ,
(plant-specificity: 16%)
GP022455 (62) ,
(plant-specificity: 100%)
GP113775 (5)
3 GP044860 (69) ,
(plant-specificity: 16%)
GP047677 (62) ,
(plant-specificity: 100%)
GP125355 (5)
4 GP074471 (69) ,
(plant-specificity: 16%)
GP077730 (62) ,
(plant-specificity: 100%)
GP140413 (5)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 136
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
1 1
3 3
1 1
8 8
2 2
3 3
2 2
5 5
1 1
2 2
2 2
3 3
2 2
2 6
3 3
2 2
2 2
3 3
2 2
2 2
3 3
6 6
3 19
2 2
2 5
2 2
2 2
5 5
2 2
3 3
6 6
3 3
9 11
5 6
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
CAP Gly-rich domain
IPR000938
CAP Gly-rich domain Domain 71 (96) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000938


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
136 110 (81%) 77 (57%) [49; 244; 966] ~306 1771 60