WARNING: The website will evolve to a new and overhauled version in the coming weeks. All user accounts, and their history (custom families) WILL be migrated to the new version (with their actual links) but this operation require to lock access temporarily to the website (ie. no new user or creation of new custom gene families) during the migration process. If this is a concern for your ongoing research, please contact us as soon as possible.

Family GP001519


Family ID GP001519  add to my list RDF
Family name Aspartate/glutamate/uridylate kinase superfamily   suggest a name
Family Ontology
Close Hide
molecular_function
protein binding
GO:0005515 (1%) - protein binding
carbamate kinase activity
GO:0008804 (1%) - carbamate kinase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Aspartate/glutamate/uridylate kinase superfamily
GP001519 (191)
2 GP018187 (122) ,
N-acetylglutamate kinase family (plant-specificity: 9%)
GP019687 (69)
3 GP042879 (122) , GP044590 (69)
4 GP072311 (122) , GP074165 (69)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 191
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
16 16
3 3
4 4
8 8
2 2
4 4
5 5
9 9
2 2
4 5
3 4
4 4
4 4
5 7
4 4
5 5
3 3
3 3
5 5
4 5
3 3
13 13
4 8
3 3
6 10
4 4
7 7
2 4
7 7
2 2
3 3
3 3
3 6
6 8
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Acetylglutamate kinase
IPR004662
Acetylglutamate kinase Family 28 (53) Yes
Amino-acid N-acetyltransferase (ArgA)
IPR010167
Amino-acid N-acetyltransferase (ArgA) Family 43 (83) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Aspartate/glutamate/uridylate kinase
IPR001048
Aspartate/glutamate/uridylate kinase Domain 84 (160) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001048 IPR010167


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
191 171 (90%) 144 (75%) [47; 364; 2881] ~428 4010 212