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Family GP001089


Family ID GP001089  add to my list RDF
Family name Serine-trna ligase family   suggest a name
Synonym(s) Seryl-trna synthetase
Family Ontology
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molecular_function
serine-tRNA ligase activity
GO:0004828 (69%) - serine-tRNA ligase activity
biological_process
seryl-tRNA aminoacylation
GO:0006434 (69%) - seryl-tRNA aminoacylation
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Serine-trna ligase family
GP001089 (189)
2 GP016638 (189)
3 GP042696 (104) , GP044132 (85)
4 GP072169 (104) , GP073665 (85)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 189
Species Count (w/o splice) Count (w/ splice)
2 2
3 3
27 27
4 5
2 2
6 6
2 2
2 2
2 2
9 9
5 5
3 6
3 3
3 3
6 6
2 6
3 3
3 3
6 6
4 4
3 3
2 4
3 3
2 2
3 7
3 3
5 7
11 11
5 5
2 5
10 10
6 6
3 4
3 3
2 3
4 6
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Serine-tRNA ligase, type1
IPR002317
Serine-tRNA ligase, type1 Family 76 (144) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain
IPR002314
Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain Domain 79 (150) No
Aminoacyl-tRNA synthetase, class II
IPR006195
Aminoacyl-tRNA synthetase, class II Domain 72 (137) No
tRNA-binding arm
IPR010978
tRNA-binding arm Domain 70 (133) No
Serine-tRNA synthetase, type1, N-terminal
IPR015866
Serine-tRNA synthetase, type1, N-terminal Domain 69 (131) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002317 IPR010978 IPR015866 IPR002314 IPR006195


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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
189 166 (88%) 129 (68%) [50; 443; 1587] ~386 2684 342