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Family GP001517


Family ID GP001517  add to my list RDF
Family name 6-phosphogluconate dehydrogenase family   suggest a name
Family Ontology
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molecular_function
phosphogluconate dehydrogenase (decarboxylating) activity
GO:0004616 (2%) - phosphogluconate dehydrogenase (decarboxylating) activity
coenzyme binding
GO:0050662 (85%) - coenzyme binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
6-phosphogluconate dehydrogenase family (plant-specificity: 9%)
GP001517 (189)
2
6-phosphogluconate dehydrogenase family
GP016680 (189)
3 GP041299 (189)
4 GP070698 (189)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 189
Species Count (w/o splice) Count (w/ splice)
6 6
1 1
17 17
7 9
2 2
8 8
3 3
4 4
5 5
16 16
5 5
2 3
2 2
2 2
3 3
3 5
2 3
2 2
3 3
5 5
2 2
3 5
3 3
8 8
4 7
5 5
8 13
4 4
7 7
2 2
6 6
4 4
3 3
2 2
4 5
6 6
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
6-phosphogluconate dehydrogenase, decarboxylating
IPR006113
6-phosphogluconate dehydrogenase, decarboxylating Family 69 (131) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
6-phosphogluconate dehydrogenase, C-terminal
IPR006114
6-phosphogluconate dehydrogenase, C-terminal Domain 85 (161) No
6-phosphogluconate dehydrogenase, NADP-binding
IPR006115
6-phosphogluconate dehydrogenase, NADP-binding Domain 87 (164) No
6-phosphogluconate dehydrogenase, C-terminal-like
IPR008927
6-phosphogluconate dehydrogenase, C-terminal-like Domain 85 (161) No
Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension
IPR012284
Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension Domain 77 (145) No
Dehydrogenase, multihelical
IPR013328
Dehydrogenase, multihelical Domain 85 (161) No
NAD(P)-binding domain
IPR016040
NAD(P)-binding domain Domain 88 (166) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016040 IPR008927 IPR013328 IPR006115 IPR006114 IPR006113 IPR012284


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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
189 172 (91%) 138 (73%) [63; 486; 1108] ~424 1665 467