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Family GP001607


Family ID GP001607  add to my list RDF
Family name Prolyl-trna synthetase family   suggest a name
Synonym(s) Prolyl-trna synthetase, class iia, prokaryotic-type
Cross-reference(s) PMID:
Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs.
2203971 PMID:
The aminoacyl-tRNA synthetase family: modules at work.
8274143
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Prolyl-trna synthetase family
GP001607 (189)
2 GP016921 (189)
3 GP041562 (189)
4 GP070948 (189)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 189
Species Count (w/o splice) Count (w/ splice)
2 2
4 4
17 17
2 2
2 2
8 8
2 2
5 5
4 4
6 6
4 4
2 5
2 3
2 2
3 3
2 3
3 3
10 10
3 3
3 3
2 2
3 4
3 3
6 6
10 20
6 6
4 13
2 2
4 4
4 5
6 6
5 5
5 5
3 3
2 3
6 9
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Proline-tRNA ligase, class IIa
IPR002316
Proline-tRNA ligase, class IIa Family 56 (105) Yes
Proline-tRNA ligase, class IIa, archaeal-type
IPR004499
Proline-tRNA ligase, class IIa, archaeal-type Family 53 (101) Yes
Prolyl-tRNA synthetase, class IIa, bacterial-type
IPR004500
Prolyl-tRNA synthetase, class IIa, bacterial-type Family 1 (1) Yes
Proline-tRNA ligase, class IIa, type 2
IPR023716
Proline-tRNA ligase, class IIa, type 2 Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain
IPR002314
Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain Domain 60 (113) No
Anticodon-binding
IPR004154
Anticodon-binding Domain 67 (126) No
Aminoacyl-tRNA synthetase, class II
IPR006195
Aminoacyl-tRNA synthetase, class II Domain 62 (118) No
Proline-tRNA ligase, class II, C-terminal
IPR016061
Proline-tRNA ligase, class II, C-terminal Domain 65 (123) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002314 IPR006195 IPR004154
Prolyl-tRNA synthetase, class II
IPR017449 IPR004499 IPR016061 IPR002316



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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
189 159 (84%) 109 (58%) [31; 490; 1135] ~390 2034 401