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Family GP001715


Family ID GP001715  add to my list RDF
Family name Atp-nad/acox kinase family   suggest a name
Synonym(s) NAD kinase
Cross-reference(s) PMID:
Identification, molecular cloning and functional characterization of a novel NADH kinase from Arabidopsis thaliana (thale cress).
15347288 PMID:
Stress induces the expression of AtNADK-1, a gene encoding a NAD(H) kinase in Arabidopsis thaliana.
15711971 PMID:
Cloning and characterization of two NAD kinases from Arabidopsis. Identification of a calmodulin binding isoform.
15247403 PMID:
NADK2, an Arabidopsis chloroplastic NAD kinase, plays a vital role in both chlorophyll synthesis and chloroplast protection.
16244906
Family Ontology
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molecular_function
NAD+ kinase activity
GO:0003951 (59%) - NAD+ kinase activity
biological_process
NADP biosynthetic process
GO:0006741 (63%) - NADP biosynthetic process
NAD metabolic process
GO:0019674 (59%) - NAD metabolic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Atp-nad/acox kinase family (plant-specificity: 30%)
GP001715 (246)
2 GP016984 (240) , GP109256 (1) , GP028202 (5)
3 GP044260 (152) , GP043955 (88) , GP055108 (4)
4 GP073810 (152) , GP073474 (88) , GP086919 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 246
Species Count (w/o splice) Count (w/ splice)
5 5
5 5
20 20
6 6
5 5
10 10
4 4
3 3
3 3
3 3
5 5
5 6
4 5
4 4
4 4
6 9
5 5
4 4
3 3
5 5
3 3
3 6
4 4
12 12
5 25
3 3
5 16
3 3
5 5
3 5
5 5
6 6
10 10
3 3
7 13
7 9
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Inorganic polyphosphate/ATP-NAD kinase, predicted
IPR002504
Inorganic polyphosphate/ATP-NAD kinase, predicted Family 63 (154) No
Beta-lactamase hydrolase-like
IPR005939
Beta-lactamase hydrolase-like Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
ATP-NAD kinase-like domain
IPR016064
ATP-NAD kinase-like domain Domain 63 (156) No
ATP-NAD kinase, PpnK-type, all-beta
IPR017437
ATP-NAD kinase, PpnK-type, all-beta Domain 59 (144) No
Inorganic polyphosphate/ATP-NAD kinase, domain 1
IPR017438
Inorganic polyphosphate/ATP-NAD kinase, domain 1 Domain 59 (146) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016064 IPR002504 IPR017438 IPR017437


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
246 197 (80%) 145 (59%) [64; 590; 1968] ~648 4605 266