Family GP000158


Family ID GP000158  add to my list RDF
Family name Abc-1 superfamily   suggest a name
Cross-reference(s) PMID:
Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles.
16414959 PMID:
Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes.
16461379 PMID:
ABC1, a novel yeast nuclear gene has a dual function in mitochondria: it suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex.
1648478
Family Ontology
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biological_process
lipopolysaccharide core region biosynthetic process
GO:0009244 (2%) - lipopolysaccharide core region biosynthetic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Abc-1 superfamily
GP000158 (1236)
2 GP015366 (1025) , GP017640 (129) , GP020631 (58) ,
(plant-specificity: 100%)
GP112137 (7) , GP114237 (4) , GP034169 (4) , GP115049 (4) , GP116290 (3)
3 GP040287 (561) , GP041611 (283) , GP042308 (129) ,
Beta-lactamase-related family
GP042710 (92) , GP043187 (89) , GP045640 (58) ,
(plant-specificity: 100%)
GP122961 (7) , GP126006 (4) , GP062841 (4) , GP127158 (4) , GP129048 (3)
4 GP069756 (494) , GP070997 (217) , GP071748 (129) , GP072186 (92) , GP072694 (89) , GP074010 (67) , GP074286 (66) , GP075295 (58) ,
(plant-specificity: 100%)
GP137164 (7) , GP141332 (4) , GP096821 (4) , GP145677 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1236
Species Count (w/o splice) Count (w/ splice)
10 10
20 20
158 158
32 34
19 19
66 66
16 16
31 31
22 22
23 23
22 22
16 27
15 18
17 17
21 21
20 39
16 17
16 16
12 12
18 18
26 26
16 27
21 21
73 73
22 82
21 21
26 84
15 15
21 21
16 24
42 42
36 36
31 33
22 22
19 21
39 60
22 22


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Bacillus/Clostridium Ger spore germination protein
IPR004995
Bacillus/Clostridium Ger spore germination protein Family 1 (1) Yes
Lipopolysaccharide core heptose(II) kinase
IPR009330
Lipopolysaccharide core heptose(II) kinase Family 2 (28) Yes
Probable ubiquinone biosynthesis protein UbiB
IPR010232
Probable ubiquinone biosynthesis protein UbiB Family 1 (1) Yes
Protein of unknown function DUF1602
IPR011633
Protein of unknown function DUF1602 Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
UbiB domain
IPR004147
UbiB domain Domain 76 (943) No
Protein kinase-like domain
IPR011009
Protein kinase-like domain Domain 77 (953) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011009 IPR004147


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Species
Information to display
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