WARNING: The website will evolve to a new and overhauled version in the coming weeks. All user accounts, and their history (custom families) WILL be migrated to the new version (with their actual links) but this operation require to lock access temporarily to the website (ie. no new user or creation of new custom gene families) during the migration process. If this is a concern for your ongoing research, please contact us as soon as possible.

Family GP001402


Family ID GP001402  add to my list RDF
Family name Chorismate mutase, AroQ class family   suggest a name
Cross-reference(s) PMID:
A metabolic node in action: chorismate-utilizing enzymes in microorganisms.
11450855 PMID:
Mechanisms of catalysis and allosteric regulation of yeast chorismate mutase from crystal structures.
9384560 PMID:
Electrostatics, allostery, and activity of the yeast chorismate mutase.
9626703
Family Ontology
Close Hide
biological_process
chorismate metabolic process
GO:0046417 (95%) - chorismate metabolic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Chorismate mutase, AroQ class family (plant-specificity: 9%)
GP001402 (185)
2 GP016539 (185)
3 GP041158 (185)
4 GP070556 (182) , GP144559 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 185
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
5 5
2 3
1 1
4 4
2 2
4 4
4 4
6 6
3 3
4 5
5 5
3 3
4 4
6 11
3 3
2 2
2 2
2 2
3 3
3 3
2 2
2 2
5 16
3 3
5 9
3 3
4 4
3 6
6 6
5 5
11 15
3 3
4 7
10 22
5 5


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Chorismate mutase, AroQ class, eukaryotic type
IPR008238
Chorismate mutase, AroQ class, eukaryotic type Family 95 (175) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Chorismate mutase, type II
IPR020822
Chorismate mutase, type II Domain 95 (175) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR020822 IPR008238


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
185 141 (76%) 127 (69%) [54; 272; 555] ~264 1181 228


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
185 127 (69%) 0.795912 0.651222 0.344989



for (default: all):
Species



(click on the button above to get your homolog prediction list)