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Family GP002173


Family ID GP002173  add to my list RDF
Family name Cation-chloride cotransporter family   suggest a name
Family Ontology
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molecular_function
cation:chloride symporter activity
GO:0015377 (17%) - cation:chloride symporter activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Cation-chloride cotransporter family
GP002173 (189)
2 GP017715 (103) , GP019344 (79) , GP114252 (4) , GP116874 (3)
3 GP042395 (103) , GP044205 (79) , GP126037 (4) , GP129924 (3)
4 GP071832 (103) , GP073732 (78) , GP141380 (4) , GP146902 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 189
Species Count (w/o splice) Count (w/ splice)
1 1
6 6
8 8
12 12
3 3
12 12
2 2
4 4
5 5
6 6
6 6
6 6
5 7
7 7
5 5
11 16
5 5
2 2
3 3
3 3
2 2
2 4
2 2
4 4
4 12
2 2
5 6
2 2
7 7
3 3
4 4
4 4
4 4
4 4
2 3
4 5
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Na/K/Cl co-transporter superfamily
IPR004842
Na/K/Cl co-transporter superfamily Family 17 (32) Yes
Protein of unknown function DUF3611
IPR022051
Protein of unknown function DUF3611 Family 39 (73) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR022051


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
189 168 (89%) 127 (67%) [51; 294; 1766] ~493 4073 106