Family GP001812


Family ID GP001812  add to my list RDF
Family name Replication protein A family   suggest a name
Synonym(s) Replication protein A, subunit RPA32
Cross-reference(s) PMID:
Replication protein A (RPA): the eukaryotic SSB.
10473346
Family Ontology
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molecular_function
protein binding
GO:0005515 (3%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Replication protein A family
GP001812 (181)
2 GP017119 (137) ,
(plant-specificity: 11%)
GP022153 (44)
3 GP042191 (137) ,
(plant-specificity: 11%)
GP047496 (44)
4 GP072357 (127) ,
(plant-specificity: 11%)
GP077354 (44) ,
(plant-specificity: 16%)
GP080561 (10)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 181
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
2 2
2 5
2 2
5 5
4 4
5 5
4 4
5 5
3 3
4 5
4 6
11 11
5 5
5 15
7 9
5 5
3 3
3 3
2 2
3 5
4 4
3 3
4 13
3 3
8 10
3 3
4 4
3 5
5 5
5 5
4 4
3 3
3 3
5 7
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Replication protein A, subunit RPA32
IPR014646
Replication protein A, subunit RPA32 Family 40 (73) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR004365
OB-fold nucleic acid binding domain, AA-tRNA synthetase-type Domain 65 (118) No
Nucleic acid-binding, OB-fold
IPR012340
Nucleic acid-binding, OB-fold Domain 85 (153) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Winged helix-turn-helix DNA-binding domain
IPR011991 IPR012340
Replication protein A, C-terminal
IPR014892 IPR014646 IPR004365



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
181 146 (81%) 114 (63%) [56; 243; 430] ~219 1232 158