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Family GP001006


Family ID GP001006  add to my list RDF
Family name Macrophage migration inhibitory factor family   suggest a name
Comment
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Macrophage migration inhibitory factor family
GP001006 (180)
2 GP016523 (180)
3 GP041141 (180)
4 GP070536 (179)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 180
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
2 2
1 3
4 4
7 7
2 2
4 4
2 2
3 3
3 3
3 4
3 6
2 2
3 3
2 8
3 3
4 4
3 3
3 3
3 3
3 5
2 2
3 3
3 9
3 3
13 25
3 3
7 7
3 5
8 8
6 6
6 6
3 3
4 5
10 13
6 6


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Macrophage migration inhibitory factor
IPR001398
Macrophage migration inhibitory factor Family 94 (169) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Tautomerase/MIF superfamily
IPR014347
Tautomerase/MIF superfamily Domain 98 (177) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR014347 IPR001398


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
180 142 (79%) 141 (78%) [56; 116; 382] ~116 608 107


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
180 141 (78%) 0.748985 0.797129 0.30604



for (default: all):
Species



(click on the button above to get your homolog prediction list)