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Family GP001526


Family ID GP001526  add to my list RDF
Family name Lysosomal cystine transporter family   suggest a name
Comment
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Lysosomal cystine transporter family (plant-specificity: 60%)
GP001526 (180)
2 GP016756 (162) ,
(plant-specificity: 100%)
GP024885 (12) ,
(plant-specificity: 100%)
GP112620 (6)
3 GP041384 (149) ,
(plant-specificity: 83%)
GP119288 (6) ,
(plant-specificity: 100%)
GP050768 (12) ,
(plant-specificity: 100%)
GP122846 (7) ,
(plant-specificity: 100%)
GP123680 (6)
4 GP071826 (148) ,
(plant-specificity: 100%)
GP083047 (10) ,
(plant-specificity: 100%)
GP137013 (7) ,
(plant-specificity: 83%)
GP137842 (6) ,
(plant-specificity: 100%)
GP138177 (6) , GP090468 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 180
Species Count (w/o splice) Count (w/ splice)
8 10
3 3
2 2
2 2
4 4
4 4
5 5
3 3
4 6
5 7
6 6
5 5
3 4
3 4
3 3
4 4
4 4
3 3
4 4
3 3
5 5
4 6
3 3
4 6
2 2
6 6
3 9
10 10
8 8
10 10
5 5
6 8
10 11
5 5


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Lysosomal cystine transporter
IPR005282
Lysosomal cystine transporter Family 27 (49) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Cystinosin/ERS1p repeat
IPR006603
Cystinosin/ERS1p repeat Repeat 56 (100) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006603


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
180 159 (88%) 123 (68%) [45; 215; 614] ~211 1462 62