Family GP001586


Family ID GP001586  add to my list RDF
Family name Ricin B family   suggest a name
Synonym(s) Lectin
Curation status ?
Found in Viridiplantae plant-specific
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Ricin B family (plant-specificity: 100%)
GP001586 (178)
2 GP015459 (1392) , GP016831 (169)
3 GP040192 (946) , GP041469 (165) ,
(plant-specificity: 98%)
GP121838 (11)
4
(plant-specificity: 97%)
GP080074 (343) , GP070971 (151) ,
(plant-specificity: 100%)
GP135136 (10) ,
(plant-specificity: 100%)
GP136816 (7) ,
(plant-specificity: 100%)
GP137964 (6) , GP148767 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 178
Species Count (w/o splice) Count (w/ splice)
1 1
4 10
10 10
26 26
3 3
5 5
4 4
2 2
1 1
9 12
8 13
7 7
16 16
9 19
8 9
1 1
1 1
1 1
1 1
2 2
1 1
1 1
3 4
1 1
2 4
1 1
1 1
1 1
4 4
2 2
3 5
1 1
1 1
5 6
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ricin B lectin domain
IPR000772
Ricin B lectin domain Domain 70 (124) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000772


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
178 147 (83%) 119 (67%) [62; 292; 661] ~264 1902 131