Family GP001709


Family ID GP001709  add to my list RDF
Family name Cornichon family   suggest a name
Cross-reference(s) PMID:
cornichon and the EGF receptor signaling process are necessary for both anterior-posterior and dorsal-ventral pattern formation in Drosophila.
7540118
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Cornichon family
GP001709 (177)
2 GP016978 (177)
3 GP041622 (177)
4 GP071011 (177)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 177
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
1 1
2 2
1 1
1 1
2 2
5 5
4 4
1 1
3 3
2 3
2 3
2 2
2 2
3 6
2 2
5 5
5 5
4 4
3 3
5 6
2 2
13 13
7 20
3 3
5 15
2 2
4 4
4 5
4 4
4 4
5 5
3 3
5 9
10 20
5 5


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Cornichon
IPR003377
Cornichon Family 94 (167) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR003377


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
177 133 (75%) 127 (72%) [43; 138; 273] ~135 586 124


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
177 127 (72%) 1.2567 1.25833 0.213062



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