Family GP001583


Family ID GP001583  add to my list RDF
Family name Pirin family   suggest a name
Cross-reference(s) PMID:
The Arabidopsis cupin domain protein AtPirin1 interacts with the G protein alpha-subunit GPA1 and regulates seed germination and early seedling development.
12837948 PMID:
Phylogeny, function, and evolution of the cupins, a structurally conserved, functionally diverse superfamily of proteins.
11264412
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Pirin family
GP001583 (177)
2 GP016828 (168) , GP111976 (9)
3 GP041647 (166) , GP121672 (9)
4 GP071039 (158) , GP135410 (9) , GP136272 (8)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 177
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
25 25
4 8
1 1
3 3
1 1
4 4
4 4
5 5
3 3
3 5
3 3
4 4
6 6
6 13
3 4
6 6
4 4
4 4
3 3
4 4
2 2
2 2
3 6
2 2
2 6
3 3
4 4
3 3
11 11
5 5
4 4
3 3
3 3
6 7
3 3


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Pirin
IPR012093
Pirin Family 68 (120) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Pirin, N-terminal domain
IPR003829
Pirin, N-terminal domain Domain 80 (142) No
Pirin, C-terminal domain
IPR008778
Pirin, C-terminal domain Domain 76 (134) No
RmlC-like cupin domain
IPR011051
RmlC-like cupin domain Domain 89 (157) No
RmlC-like jelly roll fold
IPR014710
RmlC-like jelly roll fold Domain 89 (157) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011051 IPR014710 IPR008778 IPR012093 IPR003829


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
177 155 (88%) 135 (76%) [40; 298; 567] ~273 938 261




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