Family GP001639


Family ID GP001639  add to my list RDF
Family name Clathrin heavy chain family   suggest a name
Cross-reference(s) PMID:
Clathrin self-assembly is mediated by a tandemly repeated superhelix.
10360576
Family Ontology
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molecular_function
binding
GO:0005488 (71%) - binding
protein binding
GO:0005515 (1%) - protein binding
cellular_component
clathrin coat of trans-Golgi network vesicle
GO:0030130 (70%) - clathrin coat of trans-Golgi network vesicle
clathrin coat of coated pit
GO:0030132 (70%) - clathrin coat of coated pit
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Clathrin heavy chain family (plant-specificity: 19%)
GP001639 (174)
2 GP016866 (172)
3 GP041528 (172)
4 GP070944 (172)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 174
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
17 17
4 4
3 3
6 6
9 9
11 11
4 4
3 3
2 2
4 4
3 3
5 5
11 15
4 4
2 2
3 3
2 2
2 2
1 1
1 1
8 14
2 2
6 11
1 1
2 2
1 1
8 8
10 10
3 3
3 3
10 12
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Clathrin, heavy chain
IPR016341
Clathrin, heavy chain Family 58 (101) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Clathrin, heavy chain/VPS, 7-fold repeat
IPR000547
Clathrin, heavy chain/VPS, 7-fold repeat Repeat 70 (121) No
Clathrin, heavy chain, propeller, N-terminal
IPR001473
Clathrin, heavy chain, propeller, N-terminal Domain 69 (120) No
Tetratricopeptide-like helical
IPR011990
Tetratricopeptide-like helical Domain 68 (119) No
Armadillo-type fold
IPR016024
Armadillo-type fold Domain 71 (124) No
Clathrin, heavy chain, linker/propeller domain
IPR016025
Clathrin, heavy chain, linker/propeller domain Domain 70 (121) No
Clathrin, heavy chain, propeller repeat
IPR022365
Clathrin, heavy chain, propeller repeat Repeat 57 (100) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016024 IPR011990 IPR000547
Clathrin, heavy chain, linker, core motif
IPR015348 IPR022365 IPR016341 IPR016025 IPR001473



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
174 157 (90%) 103 (59%) [74; 1664; 2459] ~1191 3580 1684