Family GP001531


Family ID GP001531  add to my list RDF
Family name Glutamate carboxypeptidase ii family   suggest a name
Cross-reference(s) PMID:
The Arabidopsis AMP1 gene encodes a putative glutamate carboxypeptidase.
11549767
Family Ontology
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molecular_function
metallocarboxypeptidase activity
GO:0004181 (1%) - metallocarboxypeptidase activity
protein binding
GO:0005515 (1%) - protein binding
biological_process
proteolysis
GO:0006508 (1%) - proteolysis
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Glutamate carboxypeptidase ii family
GP001531 (176)
2 GP016696 (171) , GP031600 (3)
3 GP041324 (171) , GP059497 (3)
4 GP070719 (171) , GP092310 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 176
Species Count (w/o splice) Count (w/ splice)
1 1
5 5
10 10
10 10
3 3
3 3
4 4
9 9
5 5
4 7
6 6
3 3
3 3
4 11
3 3
2 2
1 1
4 4
7 7
3 4
2 2
5 5
2 6
3 3
3 4
3 3
3 3
1 1
14 14
12 12
5 5
2 2
2 2
7 9
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Transferrin receptor-like, dimerisation domain
IPR007365
Transferrin receptor-like, dimerisation domain Domain 64 (112) No
Peptidase M28
IPR007484
Peptidase M28 Domain 69 (121) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR007484 IPR007365


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
176 158 (90%) 103 (59%) [50; 548; 990] ~492 2531 538