Family GP001877


Family ID GP001877  add to my list RDF
Family name ABA/WDS induced protein   suggest a name
Synonym(s) Abscisic acid stress ripening (ASR), Late embryogenesis abundant protein, group 7
Comment Late embryogenesis abundant protein, group 7 (Battaglia et al. 2008)
Curation status ?
Found in Tracheophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
ABA/WDS induced protein (plant-specificity: 37%)
GP001877 (176)
2 GP017353 (166) ,
(plant-specificity: 88%)
GP111639 (8)
3 GP042057 (166) ,
(plant-specificity: 88%)
GP122224 (8)
4 GP072177 (132) ,
(plant-specificity: 91%)
GP132734 (32) ,
(plant-specificity: 88%)
GP136166 (8)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 176
Species Count (w/o splice) Count (w/ splice)
3 3
60 60
1 1
6 6
6 6
1 1
2 2
6 7
5 7
6 6
7 7
10 12
7 8
2 2
4 4
5 5
1 1
1 1
1 1
3 4
2 2
6 6
2 2
6 6
1 1
2 2
4 4
3 3
3 3
3 3


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
ABA/WDS induced protein
IPR003496
ABA/WDS induced protein Family 94 (165) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR003496


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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
176 169 (96%) 157 (89%) [49; 127; 1078] ~146 2051 101


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
176 157 (89%) 1.02295 0.951319 0.25569



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