Family GP003023


Family ID GP003023  add to my list RDF
Family name Glycerol-3-phosphate dehydrogenase family   suggest a name
Synonym(s) FAD-dependent glycerol-3-phosphate dehydrogenase family
Cross-reference(s) PMID:
SUGAR-DEPENDENT6 encodes a mitochondrial flavin adenine dinucleotide-dependent glycerol-3-p dehydrogenase, which is required for glycerol catabolism and post germinative seedling growth in Arabidopsis.
18599644
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Glycerol-3-phosphate dehydrogenase family (plant-specificity: 60%)
GP003023 (180)
2
Glycerol-3-phosphate dehydrogenase family
GP019234 (87) ,
(plant-specificity: 98%)
GP021768 (45) ,
(plant-specificity: 100%)
GP023324 (24) ,
(plant-specificity: 100%)
GP022543 (15) ,
(plant-specificity: 100%)
GP027124 (10) ,
(plant-specificity: 100%)
GP028544 (5)
3 GP044244 (87) ,
(plant-specificity: 98%)
GP046884 (45) ,
(plant-specificity: 100%)
GP048930 (15) ,
(plant-specificity: 100%)
GP051589 (14) ,
(plant-specificity: 100%)
GP050046 (9) ,
(plant-specificity: 100%)
GP058336 (6) ,
(plant-specificity: 100%)
GP055529 (5) , GP063871 (4)
4 GP073783 (87) ,
(plant-specificity: 98%)
GP076901 (45) ,
(plant-specificity: 100%)
GP079350 (15) ,
(plant-specificity: 100%)
GP079663 (14) ,
(plant-specificity: 100%)
GP082395 (9) ,
(plant-specificity: 100%)
GP091054 (6) ,
(plant-specificity: 100%)
GP087395 (5) , GP098053 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 180
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
14 14
2 2
3 3
6 6
3 3
2 2
1 1
3 3
4 4
2 4
2 2
2 2
3 3
2 4
2 2
2 2
1 1
3 3
2 2
2 3
4 4
6 6
3 8
2 2
2 2
4 4
3 3
2 2
8 8
3 3
53 53
3 3
3 3
5 7
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
180 168 (93%) 108 (60%) [50; 244; 886] ~346 1797 102