Family GP001274


Family ID GP001274  add to my list RDF
Family name Elongation factor 1-beta family   suggest a name
Synonym(s) EEF-1B beta
Cross-reference(s) PMID:
Cloning and sequencing of the cDNA encoding rice elongation factor 1 beta'.
1397289 PMID:
Cloning and characterization of the cDNA encoding rice elongation factor 1 beta.
8307147 PMID:
A novel variant of translation elongation factor-1beta: isolation and characterization of the rice gene encoding EF-1beta2.
9804992 PMID:
Elongation factors on the ribosome.
15922593 PMID:
Structural studies of eukaryotic elongation factors.
12762045 PMID:
Elongation factors in protein biosynthesis.
12932732
Family Ontology
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cellular_component
eukaryotic translation elongation factor 1 complex
GO:0005853 (90%) - eukaryotic translation elongation factor 1 complex
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Elongation factor 1-beta family (plant-specificity: 9%)
GP001274 (175)
2 GP016320 (175)
3 GP040946 (175)
4 GP070400 (174)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 175
Species Count (w/o splice) Count (w/ splice)
1 1
4 4
1 1
3 3
3 3
3 3
4 4
3 3
5 5
3 5
6 10
2 2
3 3
3 12
3 3
2 2
4 4
3 3
2 2
4 5
2 2
9 9
4 16
2 2
4 9
2 2
8 8
2 6
19 19
2 2
5 5
3 3
4 4
6 7
3 3


Information to display




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No IPR family


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IPR Annotation Type % Occurence Specificity
Translation elongation factor EF1B, beta/delta chains, conserved site
IPR001326
Translation elongation factor EF1B, beta/delta chains, conserved site Conserved_site 85 (149) No
Glutathione S-transferase, C-terminal-like
IPR010987
Glutathione S-transferase, C-terminal-like Domain 82 (143) No
Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange
IPR014038
Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange Domain 90 (157) No
Translation elongation factor EF1B/ribosomal protein S6
IPR014717
Translation elongation factor EF1B/ribosomal protein S6 Domain 90 (158) No

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Clustering
 



Close Representative InterPro domains - Consensus schema
IPR010987 IPR001326 IPR014038 IPR014717


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
175 137 (78%) 122 (70%) [44; 227; 750] ~220 1072 214




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