Family GP001686


Family ID GP001686  add to my list RDF
Family name ThiJ/PfpI family   suggest a name
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
ThiJ/PfpI family
GP001686 (173)
2
Dj-1 subfamily
GP016949 (171)
3 GP041591 (171)
4 GP070979 (171)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 173
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
7 7
2 2
1 1
16 16
2 2
3 3
2 2
6 6
3 3
4 8
4 4
7 7
4 4
6 16
4 4
2 2
2 2
2 2
5 5
3 6
2 2
7 7
4 16
5 5
2 2
3 3
3 3
2 6
6 6
3 3
3 3
2 2
3 3
4 5
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
DJ-1
IPR006287
DJ-1 Family 69 (120) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
ThiJ/PfpI
IPR002818
ThiJ/PfpI Domain 82 (142) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002818 IPR006287


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
173 139 (80%) 93 (54%) [56; 362; 776] ~321 1612 352