Family GP002224


Family ID GP002224  add to my list RDF
Family name Late embryogenesis abundant 3 family   suggest a name
Curation status ?
Found in Embryophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Late embryogenesis abundant 3 family (plant-specificity: 100%)
GP002224 (175)
2
(plant-specificity: 100%)
GP018911 (123) ,
(plant-specificity: 100%)
GP023180 (47) , GP037575 (3)
3
(plant-specificity: 100%)
GP046729 (114) ,
(plant-specificity: 100%)
GP048556 (47) ,
(plant-specificity: 100%)
GP121738 (9) , GP066924 (3)
4 GP076501 (74) ,
(plant-specificity: 100%)
GP079748 (29) ,
(plant-specificity: 100%)
GP080791 (28) ,
(plant-specificity: 100%)
GP135518 (9) ,
(plant-specificity: 100%)
GP136676 (7) ,
(plant-specificity: 100%)
GP137929 (6) ,
(plant-specificity: 100%)
GP081990 (6) ,
(plant-specificity: 100%)
GP086299 (5) , GP141033 (4) , GP101603 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 175
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
20 20
3 3
5 5
4 4
2 2
2 2
5 5
5 5
1 1
8 8
8 9
7 7
2 2
3 3
3 3
1 1
4 6
3 3
10 10
6 11
3 3
4 6
3 3
6 6
4 5
5 5
4 4
5 5
3 3
7 8
9 10
5 5


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Late embryogenesis abundant protein, LEA-5
IPR004926
Late embryogenesis abundant protein, LEA-5 Family 91 (159) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004926


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
175 162 (93%) 157 (90%) [41; 98; 171] ~96 299 52


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
175 157 (90%) 1.01742 1.01271 0.299726



for (default: all):
Species



(click on the button above to get your homolog prediction list)