Family GP001658


Family ID GP001658  add to my list RDF
Family name Phosphoglucomutase family   suggest a name
Synonym(s) Phosphomannomutase
Cross-reference(s) PMID:
Molecular and biochemical characterization of cytosolic phosphoglucomutase in maize: expression during development and in response to oxygen deprivation.
9662542 PMID:
The plastidic phosphoglucomutase from Arabidopsis. A reversible enzyme reaction with an important role in metabolic control.
10759515 PMID:
Molecular characterisation of a new mutant allele of the plastid phosphoglucomutase in Arabidopsis, and complementation of the mutant with the wild-type cDNA.
10954083
Family Ontology
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molecular_function
intramolecular transferase activity, phosphotransferases
GO:0016868 (87%) - intramolecular transferase activity, phosphotransferases
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Phosphoglucomutase family
GP001658 (174)
2 GP016928 (174)
3 GP041568 (174)
4 GP070954 (174)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 174
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
9 9
4 8
2 2
7 7
2 2
5 5
3 3
6 6
6 6
2 4
2 4
2 2
2 2
3 10
2 2
3 3
2 2
2 2
3 5
2 2
4 4
3 15
3 3
4 17
4 4
4 4
2 3
5 5
7 7
4 6
2 2
2 3
8 9
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Alpha-D-phosphohexomutase superfamily
IPR005841
Alpha-D-phosphohexomutase superfamily Family 76 (132) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Alpha-D-phosphohexomutase, C-terminal
IPR005843
Alpha-D-phosphohexomutase, C-terminal Domain 70 (121) No
Alpha-D-phosphohexomutase, alpha/beta/alpha domain I
IPR005844
Alpha-D-phosphohexomutase, alpha/beta/alpha domain I Domain 76 (132) No
Alpha-D-phosphohexomutase, alpha/beta/alpha domain II
IPR005845
Alpha-D-phosphohexomutase, alpha/beta/alpha domain II Domain 75 (130) No
Alpha-D-phosphohexomutase, alpha/beta/alpha domain III
IPR005846
Alpha-D-phosphohexomutase, alpha/beta/alpha domain III Domain 76 (132) No
Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III
IPR016055
Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III Domain 87 (152) No
Alpha-D-phosphohexomutase, conserved site
IPR016066
Alpha-D-phosphohexomutase, conserved site Conserved_site 72 (125) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR005844 IPR005841 IPR005845 IPR005846 IPR016055 IPR005843 IPR016066


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
174 127 (73%) 96 (55%) [48; 583; 724] ~501 1319 540