Family GP001576


Family ID GP001576  add to my list RDF
Family name Methionine sulphoxide reductase B family   suggest a name
Cross-reference(s) PMID:
Thiol-disulfide exchange is involved in the catalytic mechanism of peptide methionine sulfoxide reductase.
10841552
Family Ontology
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molecular_function
protein serine/threonine phosphatase activity
GO:0004722 (1%) - protein serine/threonine phosphatase activity
peptide-methionine (R)-S-oxide reductase activity
GO:0033743 (95%) - peptide-methionine (R)-S-oxide reductase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Methionine sulphoxide reductase B family
GP001576 (172)
2 GP016790 (172)
3 GP041430 (172)
4 GP071407 (129) , GP078124 (41)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 172
Species Count (w/o splice) Count (w/ splice)
1 1
4 4
15 15
3 6
5 5
6 6
1 1
2 2
1 1
4 4
3 4
3 6
1 1
2 2
3 4
3 3
3 3
3 3
4 4
3 3
9 15
2 2
5 5
4 8
3 3
5 18
3 3
3 3
3 3
7 7
3 3
5 5
3 3
4 4
5 7
5 5


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Peptide methionine sulphoxide reductase MrsB
IPR002579
Peptide methionine sulphoxide reductase MrsB Domain 95 (163) No
Mss4-like
IPR011057
Mss4-like Domain 94 (162) No

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Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002579 IPR011057


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
172 139 (81%) 135 (78%) [51; 161; 726] ~171 974 115


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
172 135 (78%) 0.786609 0.360182 0.656521



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