Family GP001868


Family ID GP001868  add to my list RDF
Family name GNS1/SUR4 membrane protein family   suggest a name
Cross-reference(s) PMID:
Cloning and characterization of GNS1: a Saccharomyces cerevisiae gene involved in synthesis of 1,3-beta-glucan in vitro.
7768822
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
GNS1/SUR4 membrane protein family (plant-specificity: 9%)
GP001868 (175)
2 GP017381 (135) ,
(plant-specificity: 25%)
GP109841 (22) , GP110064 (18)
3 GP042045 (135) ,
(plant-specificity: 25%)
GP119679 (22) , GP119943 (18)
4 GP073629 (74) , GP076241 (60) ,
(plant-specificity: 25%)
GP133050 (22) , GP133371 (18)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 175
Species Count (w/o splice) Count (w/ splice)
3 3
34 34
4 4
2 2
9 9
2 2
2 2
2 2
3 3
2 2
2 2
2 2
3 3
2 2
4 4
2 2
2 2
8 8
9 9
2 2
4 4
2 2
7 7
7 8
4 4
4 6
3 3
6 6
4 4
3 3
3 3
5 5
5 5
5 5
6 6
5 5


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
GNS1/SUR4 membrane protein
IPR002076
GNS1/SUR4 membrane protein Family 89 (156) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002076


Build your own display:   ?

Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
175 172 (98%) 162 (93%) [70; 284; 722] ~271 1381 154


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
175 162 (93%) 1.35642 1.21056 0.415734



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Species



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