Family GP001926


Family ID GP001926  add to my list RDF
Family name Asparagine and aspartate rich protein 2 family   suggest a name
Synonym(s) Aarp2cn, unknown function duf663 family
Cross-reference(s) PMID:
Plasmodium falciparum asparagine and aspartate rich protein 2 is an evolutionary conserved protein whose repeats identify a new family of parasite antigens.
9247928
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Asparagine and aspartate rich protein 2 family
GP001926 (172)
2 GP019730 (94) ,
(plant-specificity: 11%)
GP020282 (78)
3 GP044636 (94) , GP045260 (78)
4 GP074211 (94) , GP074879 (78)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 172
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
25 25
4 4
2 2
9 9
3 3
2 2
2 2
4 4
3 3
2 3
2 2
2 2
2 2
3 5
2 2
2 2
2 2
3 3
3 3
2 2
2 2
13 13
4 12
2 2
3 5
3 3
4 4
2 5
9 9
8 8
6 8
2 2
3 3
7 8
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ribosome biogenesis protein BMS1/TSR1, C-terminal
IPR007034
Ribosome biogenesis protein BMS1/TSR1, C-terminal Domain 73 (126) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
AARP2CN
IPR012948 IPR007034



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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
172 153 (89%) 106 (62%) [55; 791; 1406] ~735 2420 353