Family GP001590


Family ID GP001590  add to my list RDF
Family name UTP--glucose-1-phosphate uridylyltransferase family   suggest a name
Cross-reference(s) PMID:
UDP-glucose pyrophosphorylase from potato tuber: cDNA cloning and sequencing.
2229031 PMID:
Molecular cloning and sequence variation of UDP-glucose pyrophosphorylase cDNAs from potatoes sensitive and resistant to cold sweetening.
15384406 PMID:
UDP-glucose pyrophosphorylase from potato tuber: purification and characterization.
2558111 PMID:
Expression in Escherichia coli of UDP-glucose pyrophosphorylase cDNA from potato tuber and functional assessment of the five lysyl residues located at the substrate-binding site.
1909568
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
UTP--glucose-1-phosphate uridylyltransferase family (plant-specificity: 9%)
GP001590 (168)
2 GP017039 (168)
3 GP041764 (160) ,
(plant-specificity: 25%)
GP050125 (8)
4 GP071078 (160) ,
(plant-specificity: 33%)
GP085990 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 168
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
4 5
1 1
8 8
2 2
3 3
2 2
2 2
3 3
7 8
2 3
1 1
3 3
10 16
2 2
10 10
2 2
3 3
2 2
3 4
2 2
4 4
9 24
2 2
4 9
2 2
4 4
2 4
8 8
4 4
5 6
4 4
2 2
8 8
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Hantavirus nucleocapsid protein
IPR002214
Hantavirus nucleocapsid protein Family 1 (1) Yes
UTP--glucose-1-phosphate uridylyltransferase
IPR002618
UTP--glucose-1-phosphate uridylyltransferase Family 86 (144) No
UTP--glucose-1-phosphate uridylyltransferase, subgroup
IPR016267
UTP--glucose-1-phosphate uridylyltransferase, subgroup Family 38 (63) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002618 IPR016267


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
168 135 (80%) 76 (45%) [47; 443; 753] ~369 1407 415