Family GP001716


Family ID GP001716  add to my list RDF
Family name Arsenite-transporting atpase family   suggest a name
Synonym(s) Anion-transporting atpase
Cross-reference(s) PMID:
The plasmid-encoded arsenical resistance pump: an anion-translocating ATPase.
1704144
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Arsenite-transporting atpase family
GP001716 (170)
2 GP017017 (102) , GP109163 (68)
3 GP042892 (102) , GP046525 (68)
4 GP072395 (102) , GP076249 (68)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 170
Species Count (w/o splice) Count (w/ splice)
3 3
3 3
9 9
4 4
2 2
5 5
2 2
4 4
5 5
5 5
5 5
2 2
3 5
3 3
3 3
5 8
3 3
3 3
4 4
6 6
4 4
3 8
3 3
8 8
6 15
5 5
4 6
3 3
4 4
2 3
5 5
3 3
6 6
2 2
2 2
5 7
2 2


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Arsenical pump ATPase, ArsA/GET3
IPR016300
Arsenical pump ATPase, ArsA/GET3 Family 76 (129) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Anion-transporting ATPase-like domain
IPR025723
Anion-transporting ATPase-like domain Domain 94 (159) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR025723 IPR016300


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
170 146 (86%) 125 (74%) [38; 361; 804] ~343 1929 265




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