Family GP001887


Family ID GP001887  add to my list RDF
Family name Ribosomal protein l15 family   suggest a name
Cross-reference(s) PMID:
Characterization of rps17, rp19 and rpl15: three nucleus-encoded plastid ribosomal protein genes.
1581570 PMID:
The ribosome in focus.
11290319 PMID:
The end of the beginning: structural studies of ribosomal proteins.
11114498
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Ribosomal protein l15 family (plant-specificity: 9%)
GP001887 (168)
2 GP019243 (80) ,
(plant-specificity: 19%)
GP021215 (59) ,
(plant-specificity: 40%)
GP023805 (21) ,
(plant-specificity: 37%)
GP027897 (8)
3 GP044081 (80) ,
(plant-specificity: 19%)
GP046282 (59) ,
(plant-specificity: 40%)
GP049339 (21) ,
(plant-specificity: 37%)
GP054711 (8)
4 GP073608 (80) ,
(plant-specificity: 19%)
GP075973 (59) ,
(plant-specificity: 30%)
GP079602 (17) ,
(plant-specificity: 37%)
GP086443 (8)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 168
Species Count (w/o splice) Count (w/ splice)
2 2
3 3
21 21
5 5
3 3
7 7
3 3
4 4
3 3
5 5
5 5
4 7
3 4
7 7
3 3
4 5
4 4
2 2
2 2
2 2
2 2
2 2
2 2
5 5
4 10
2 2
5 7
2 2
3 3
2 3
9 9
3 3
5 5
3 3
2 4
5 7
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein L15, bacterial-type
IPR005749
Ribosomal protein L15, bacterial-type Family 67 (112) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ribosomal protein L18e/L15P
IPR021131
Ribosomal protein L18e/L15P Domain 74 (125) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR021131 IPR005749


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
168 150 (89%) 126 (75%) [72; 264; 914] ~272 1946 132