Family GP001601


Family ID GP001601  add to my list RDF
Family name Pyridine nucleotide-disulphide oxidoreductase, class-II family   suggest a name
Synonym(s) Thioredoxin reductase NTR
Cross-reference(s) PMID:
Rice NTRC is a high-efficiency redox system for chloroplast protection against oxidative damage.
16891402 PMID:
A proposed reaction mechanism for rice NADPH thioredoxin reductase C, an enzyme with protein disulfide reductase activity.
19345687 PMID:
The C-type Arabidopsis thioredoxin reductase ANTR-C acts as an electron donor to 2-Cys peroxiredoxins in chloroplasts.
16884685
Comment
Family Ontology
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molecular_function
ferredoxin-NADP+ reductase activity
GO:0004324 (1%) - ferredoxin-NADP+ reductase activity
thioredoxin-disulfide reductase activity
GO:0004791 (1%) - thioredoxin-disulfide reductase activity
protein binding
GO:0005515 (1%) - protein binding
alkyl hydroperoxide reductase activity
GO:0008785 (1%) - alkyl hydroperoxide reductase activity
identical protein binding
GO:0042802 (1%) - identical protein binding
biological_process
response to reactive oxygen species
GO:0000302 (1%) - response to reactive oxygen species
removal of superoxide radicals
GO:0019430 (58%) - removal of superoxide radicals
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Pyridine nucleotide-disulphide oxidoreductase, class-II family
GP001601 (167)
2 GP016855 (167)
3 GP041493 (167)
4 GP070878 (167)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 167
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
5 5
4 4
2 2
18 18
2 2
4 4
3 3
10 10
6 6
4 4
3 3
3 3
3 3
4 8
4 5
2 2
5 5
4 4
2 2
3 3
3 3
2 2
2 6
5 5
3 4
9 9
4 4
3 4
7 7
3 3
5 5
3 3
3 3
5 5
4 4


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Pyridine nucleotide-disulphide oxidoreductase, class-II
IPR000103
Pyridine nucleotide-disulphide oxidoreductase, class-II Family 89 (149) No
Thioredoxin reductase
IPR005982
Thioredoxin reductase Family 58 (97) Yes
Alkyl hydroperoxide reductase subunit F
IPR012081
Alkyl hydroperoxide reductase subunit F Family 1 (1) Yes
FAD-dependent pyridine nucleotide-disulphide oxidoreductase
IPR013027
FAD-dependent pyridine nucleotide-disulphide oxidoreductase Family 83 (139) No
Ferredoxin--NADP reductase, type 2
IPR022890
Ferredoxin--NADP reductase, type 2 Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain
IPR001327
Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain Domain 70 (117) No
Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain
IPR023753
Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain Domain 81 (135) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000103 IPR023753 IPR013027 IPR001327 IPR005982
Pyridine nucleotide-disulphide oxidoreductase, class-II, active site
IPR008255



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
167 156 (93%) 118 (71%) [71; 370; 683] ~357 1501 297