Family GP001819


Family ID GP001819  add to my list RDF
Family name Large subunit ribosomal protein l1 family   suggest a name
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Large subunit ribosomal protein l1 family (plant-specificity: 9%)
GP001819 (167)
2
Large subunit ribosomal protein l1 subfamily
GP017128 (167)
3 GP041772 (167)
4 GP072634 (167)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 167
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
25 25
5 7
2 2
7 7
2 2
3 3
3 3
4 4
4 4
3 3
2 2
2 2
2 2
2 3
2 2
2 2
1 1
2 2
2 2
2 3
4 4
6 6
2 8
4 4
3 20
2 2
3 3
4 6
10 10
2 2
3 3
3 3
2 2
6 6
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein L1
IPR002143
Ribosomal protein L1 Family 83 (139) No
Ribosomal protein L1, bacterial-type
IPR005878
Ribosomal protein L1, bacterial-type Family 59 (99) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ribosomal protein L1, 2-layer alpha/beta-sandwich
IPR016094
Ribosomal protein L1, 2-layer alpha/beta-sandwich Domain 88 (147) No
Ribosomal protein L1, 3-layer alpha/beta-sandwich
IPR016095
Ribosomal protein L1, 3-layer alpha/beta-sandwich Domain 80 (134) No
Ribosomal protein L1, conserved site
IPR023673
Ribosomal protein L1, conserved site Conserved_site 54 (90) No
Ribosomal protein L1, superfamily
IPR023674
Ribosomal protein L1, superfamily Domain 89 (149) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016095 IPR023673 IPR016094 IPR002143 IPR023674 IPR005878


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
167 138 (83%) 111 (66%) [60; 330; 1025] ~300 1408 219