Family GP001476


Family ID GP001476  add to my list RDF
Family name Ribosomal protein l13e family   suggest a name
Synonym(s) 60s ribosomal protein l13, large subunit ribosomal protein l13e
Cross-reference(s) PMID:
The ribosome in focus.
11290319 PMID:
The end of the beginning: structural studies of ribosomal proteins.
11114498
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Ribosomal protein l13e family
GP001476 (166)
2 GP016634 (166)
3 GP041252 (166)
4 GP070649 (166)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 166
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
16 16
6 8
2 2
2 2
2 2
5 5
5 5
4 4
4 4
3 7
2 3
2 2
5 5
3 7
3 3
5 5
3 3
3 3
2 2
3 7
3 3
2 2
4 8
4 4
4 8
2 2
5 5
2 5
7 7
5 5
4 6
3 3
3 3
4 6
2 2


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein L13e
IPR001380
Ribosomal protein L13e Family 90 (149) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ribosomal protein L13e, conserved site
IPR018256
Ribosomal protein L13e, conserved site Conserved_site 78 (130) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001380 IPR018256


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
166 136 (82%) 124 (75%) [33; 208; 367] ~192 684 206


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
166 124 (75%) 0.511769 0.442629 0.222097



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Species



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