Family GP001783


Family ID GP001783  add to my list RDF
Family name 60S ribosomal protein L36 family   suggest a name
Synonym(s) Ribosomal protein L36e
Cross-reference(s) PMID:
Atomic structures at last: the ribosome in 2000.
11297922
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
60S ribosomal protein L36 family
GP001783 (166)
2 GP017073 (166)
3 GP041720 (166)
4 GP071126 (166)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 166
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
13 13
3 3
2 2
5 5
3 3
7 7
4 4
5 5
3 3
2 5
3 7
2 2
2 2
2 6
3 4
2 2
4 4
3 3
2 2
3 7
4 4
12 12
4 12
3 3
4 7
2 2
4 4
2 4
3 3
2 2
2 4
4 4
2 2
4 10
2 2


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein L36e
IPR000509
Ribosomal protein L36e Family 89 (147) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000509


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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
166 129 (78%) 126 (76%) [25; 111; 335] ~114 593 108


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
166 126 (76%) 0.649867 0.508209 0.329322



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