Family GP001043


Family ID GP001043  add to my list RDF
Family name Phosphotransferase KptA/Tpt1 family   suggest a name
Comment
Family Ontology
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molecular_function
heat shock protein binding
GO:0031072 (1%) - heat shock protein binding
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Phosphotransferase KptA/Tpt1 family (plant-specificity: 30%)
GP001043 (167)
2 GP018654 (100) ,
(plant-specificity: 70%)
GP019208 (62) , GP116000 (3)
3 GP043394 (98) ,
(plant-specificity: 70%)
GP044038 (62) , GP128553 (3)
4 GP073029 (98) , GP073905 (62) , GP144899 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 167
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
9 9
6 6
3 3
3 3
2 2
3 3
2 2
2 3
2 3
3 3
2 2
8 16
3 3
2 2
2 2
2 2
3 3
3 4
2 2
3 3
15 20
2 2
4 11
7 7
3 3
2 4
5 5
4 4
7 9
4 4
2 3
8 14
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Phosphotransferase KptA/Tpt1
IPR002745
Phosphotransferase KptA/Tpt1 Family 57 (96) No
2'-phosphotransferase KptA, putative
IPR022928
2'-phosphotransferase KptA, putative Family 1 (1) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002745


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
167 133 (80%) 106 (63%) [47; 276; 600] ~265 1262 111