Family GP001549


Family ID GP001549  add to my list RDF
Family name Survival protein sure-like phosphatase / nucleotidase family   suggest a name
Cross-reference(s) PMID:
General enzymatic screens identify three new nucleotidases in Escherichia coli. Biochemical characterization of SurE, YfbR, and YjjG.
15489502 PMID:
A new gene involved in stationary-phase survival located at 59 minutes on the Escherichia coli chromosome.
7928962 PMID:
Complementation of Saccharomyces cerevisiae acid phosphatase mutation by a genomic sequence from the yeast Yarrowia lipolytica identifies a new phosphatase.
1423722
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Survival protein sure-like phosphatase / nucleotidase family
GP001549 (165)
2 GP016724 (165)
3 GP041357 (165)
4 GP072963 (165)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 165
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
2 3
1 1
9 9
2 2
5 5
3 3
4 4
3 3
2 4
2 3
3 3
2 2
4 10
2 2
2 2
5 5
5 5
3 3
2 3
3 3
12 12
5 17
4 4
4 6
3 3
6 6
2 5
3 3
2 2
4 4
3 3
4 4
9 14
4 4


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Survival protein SurE-like phosphatase/nucleotidase
IPR002828
Survival protein SurE-like phosphatase/nucleotidase Family 93 (154) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002828


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
165 132 (80%) 119 (72%) [56; 313; 726] ~316 1189 228


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
165 119 (72%) 0.960233 0.885993 0.193515



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