Family GP001222


Family ID GP001222  add to my list RDF
Family name Ribosomal protein L32e family   suggest a name
Family Ontology
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molecular_function
binding
GO:0005488 (1%) - binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Ribosomal protein L32e family (plant-specificity: 9%)
GP001222 (163)
2 GP016682 (163)
3 GP041305 (163)
4 GP070726 (162)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 163
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
16 16
5 5
1 1
2 2
5 5
4 4
2 2
2 2
4 6
4 5
4 4
3 3
5 13
3 3
3 3
5 5
2 2
2 2
2 3
2 2
1 1
7 18
3 3
4 5
2 2
5 5
3 9
6 6
4 4
3 3
3 3
3 3
8 8
3 3


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein L32e
IPR001515
Ribosomal protein L32e Family 91 (148) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001515


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
163 133 (82%) 130 (80%) [30; 134; 600] ~141 1656 132


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
163 130 (80%) 0.292146 0.165788 0.236427



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Species



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