Family GP002850


Family ID GP002850  add to my list RDF
Family name Carbohydrate kinase, FGGY family   suggest a name
Family Ontology
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molecular_function
glycerol kinase activity
GO:0004370 (22%) - glycerol kinase activity
ribulokinase activity
GO:0008741 (1%) - ribulokinase activity
transmembrane transporter activity
GO:0022857 (1%) - transmembrane transporter activity
biological_process
L-arabinose catabolic process
GO:0019572 (1%) - L-arabinose catabolic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Carbohydrate kinase, FGGY family (plant-specificity: 11%)
GP002850 (167)
2
Carbohydrate kinase, FGGY-related subfamily
GP019139 (85) ,
Glycerol kinase and xylulokinase subfamily (plant-specificity: 22%)
GP019166 (78) , GP032678 (4)
3
(plant-specificity: 22%)
GP044004 (78) , GP044123 (72) , GP120782 (13) , GP060923 (4)
4 GP073516 (78) , GP073655 (72) , GP134626 (11) , GP094300 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 167
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
17 17
4 8
3 3
10 10
3 3
3 3
2 2
8 8
5 5
2 4
5 6
2 2
2 2
3 4
2 2
2 2
2 2
2 2
4 4
2 5
2 2
9 9
2 9
2 2
3 5
2 2
10 10
3 4
5 5
5 5
3 3
2 2
2 2
5 7
2 2


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
L-ribulokinase
IPR005929
L-ribulokinase Family 1 (1) Yes
Glycerol kinase
IPR005999
Glycerol kinase Family 22 (37) Yes
Carbohydrate kinase, FGGY-related
IPR006003
Carbohydrate kinase, FGGY-related Family 27 (45) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Carbohydrate kinase, FGGY, N-terminal
IPR018484
Carbohydrate kinase, FGGY, N-terminal Domain 66 (110) No
Carbohydrate kinase, FGGY, C-terminal
IPR018485
Carbohydrate kinase, FGGY, C-terminal Domain 70 (117) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR018484 IPR018485


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
167 144 (86%) 102 (61%) [44; 520; 965] ~436 2320 194