Family GP001512


Family ID GP001512  add to my list RDF
Family name Cation transport protein chac family   suggest a name
Synonym(s) ChaC-like
Cross-reference(s) PMID:
Cloning and characterization of a putative Ca2+/H+ antiporter gene from Escherichia coli upon functional complementation of Na+/H+ antiporter-deficient strains by the overexpressed gene.
8496184
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Cation transport protein chac family (plant-specificity: 11%)
GP001512 (164)
2 GP016677 (164)
3 GP041293 (164)
4 GP070692 (164)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 164
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
5 5
5 5
2 2
10 10
3 3
5 5
5 5
5 5
3 3
2 9
3 4
2 2
2 2
5 12
2 3
3 3
3 3
3 3
2 2
3 3
2 2
10 10
3 13
3 3
6 10
3 3
2 2
3 6
7 7
1 1
4 5
3 3
2 2
3 3
3 3


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
ChaC-like protein
IPR006840
ChaC-like protein Family 92 (151) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Butirosin biosynthesis, BtrG-like
IPR013024
Butirosin biosynthesis, BtrG-like Domain 82 (135) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013024 IPR006840


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
164 130 (79%) 117 (71%) [40; 212; 465] ~196 1333 176




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