Family GP001697


Family ID GP001697  add to my list RDF
Family name Oligsaccharyl transferase stt3 family   suggest a name
Cross-reference(s) PMID:
STT3, a highly conserved protein required for yeast oligosaccharyl transferase activity in vivo.
7588624
Family Ontology
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molecular_function
oligosaccharyl transferase activity
GO:0004576 (86%) - oligosaccharyl transferase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Oligsaccharyl transferase stt3 family (plant-specificity: 9%)
GP001697 (162)
2 GP017048 (162)
3 GP041692 (162)
4 GP071092 (162)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 162
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
14 14
3 3
2 2
16 16
2 2
3 3
4 4
7 7
3 3
2 3
3 3
3 3
3 3
5 10
3 3
5 5
1 1
2 2
7 7
2 2
5 5
4 4
4 11
2 2
4 6
2 2
2 2
3 5
8 8
3 3
3 4
2 2
2 2
5 5
2 2


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Oligosaccharyl transferase, STT3 subunit
IPR003674
Oligosaccharyl transferase, STT3 subunit Family 86 (140) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR003674


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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
162 144 (89%) 101 (62%) [42; 721; 949] ~570 1794 613