Family GP001622


Family ID GP001622  add to my list RDF
Family name Ribosomal protein s12e family   suggest a name
Cross-reference(s) PMID:
Atomic structures at last: the ribosome in 2000.
11297922
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Ribosomal protein s12e family
GP001622 (163)
2 GP016832 (163)
3 GP041470 (163)
4 GP070853 (163)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 163
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
16 16
3 3
1 1
2 2
2 2
6 6
4 4
5 5
5 5
2 5
2 4
2 2
3 3
3 10
3 3
2 2
4 4
3 3
2 2
2 5
2 2
4 11
2 2
4 9
2 2
7 7
3 5
4 4
2 2
3 4
3 3
3 3
6 10
9 9


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein S12e
IPR000530
Ribosomal protein S12e Family 86 (140) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR004038
Ribosomal protein L7Ae/L30e/S12e/Gadd45 Domain 88 (144) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000530 IPR004038


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
163 128 (79%) 125 (77%) [41; 141; 607] ~146 1289 133


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
163 125 (77%) 0.514399 0.40775 0.278866



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