Family GP001665


Family ID GP001665  add to my list RDF
Family name Translocase seca family   suggest a name
Synonym(s) Chloroplast-associated seca, preprotein translocase seca
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Translocase seca family
GP001665 (165)
2 GP016932 (155) ,
(plant-specificity: 100%)
GP111896 (8)
3 GP041571 (155) ,
(plant-specificity: 100%)
GP122586 (8)
4 GP070958 (155) ,
(plant-specificity: 100%)
GP137547 (7)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 165
Species Count (w/o splice) Count (w/ splice)
2 2
6 6
11 11
5 6
3 3
25 25
2 2
2 2
2 2
7 7
2 2
3 3
2 2
2 2
2 2
4 4
2 2
5 5
2 2
3 3
2 2
2 5
2 2
4 4
2 8
3 3
4 7
5 5
2 2
2 2
4 4
8 8
6 6
2 2
2 2
6 8
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Protein translocase subunit SecA
IPR000185
Protein translocase subunit SecA Family 61 (101) Yes
Uncharacterised protein family UPF0149
IPR011978
Uncharacterised protein family UPF0149 Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
SecA DEAD-like, N-terminal
IPR011115
SecA DEAD-like, N-terminal Domain 65 (107) No
SecA preprotein, cross-linking domain
IPR011130
SecA preprotein, cross-linking domain Domain 59 (98) No
SecA motor DEAD
IPR014018
SecA motor DEAD Domain 74 (122) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000185 IPR011130
SecA conserved site
IPR020937
SecA Wing/Scaffold
IPR011116 IPR011115 IPR014018



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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
165 147 (89%) 80 (48%) [50; 865; 1805] ~660 3889 730