Family GP001631


Family ID GP001631  add to my list RDF
Family name AMP deaminase family   suggest a name
Synonym(s) Adenosine/amp deaminase , myoadenylate deaminase
Cross-reference(s) PMID:
EMBRYONIC FACTOR 1 encodes an AMP deaminase and is essential for the zygote to embryo transition in Arabidopsis.
15918887 PMID:
Membrane association, mechanism of action, and structure of Arabidopsis embryonic factor 1 (FAC1).
16543243
Family Ontology
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molecular_function
AMP deaminase activity
GO:0003876 (57%) - AMP deaminase activity
protein binding
GO:0005515 (1%) - protein binding
deaminase activity
GO:0019239 (64%) - deaminase activity
enzyme binding
GO:0019899 (1%) - enzyme binding
biological_process
purine ribonucleoside monophosphate biosynthetic process
GO:0009168 (64%) - purine ribonucleoside monophosphate biosynthetic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
AMP deaminase family (plant-specificity: 9%)
GP001631 (161)
2 GP017246 (161)
3 GP041901 (161)
4 GP071309 (161)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 161
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
17 17
3 3
2 2
7 7
2 2
3 3
3 3
3 3
2 2
2 5
2 4
3 3
2 2
2 5
2 2
2 2
2 2
2 2
4 4
1 2
2 2
4 4
3 17
2 2
3 11
2 2
5 5
1 5
5 5
6 6
9 10
3 3
2 2
7 8
2 2


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
AMP deaminase
IPR006329
AMP deaminase Family 57 (92) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Adenosine/AMP deaminase domain
IPR001365
Adenosine/AMP deaminase domain Domain 82 (132) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006329
Adenosine/AMP deaminase active site
IPR006650 IPR001365



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
161 124 (77%) 93 (58%) [78; 802; 951] ~648 1573 709