Family GP001823


Family ID GP001823  add to my list RDF
Family name PAR1 family   suggest a name
Cross-reference(s) PMID:
A simplified procedure for the subtractive cDNA cloning of photoassimilate-responding genes: isolation of cDNAs encoding a new class of pathogenesis-related proteins.
8555446
Curation status ?
Found in Embryophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
PAR1 family (plant-specificity: 100%)
GP001823 (161)
2 GP017133 (161)
3 GP041845 (161)
4 GP071259 (161)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 161
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
15 15
3 3
3 3
4 4
9 9
6 6
3 3
3 4
4 4
6 6
8 8
8 8
4 4
2 2
2 2
4 4
8 12
2 2
9 11
3 3
6 6
3 3
9 9
2 2
6 6
4 4
3 3
6 6
5 5


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
PAR1
IPR009489
PAR1 Family 90 (145) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR009489


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
161 154 (96%) 143 (89%) [59; 180; 470] ~175 1043 146


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
161 143 (89%) 1.31413 1.27462 0.226039



for (default: all):
Species



(click on the button above to get your homolog prediction list)